Dynamics of Plant Growth; A Theory Based on Riemannian Geometry

atmire.migration.oldid3949
dc.contributor.advisorHobill, David
dc.contributor.authorPulwicki, Julia
dc.contributor.committeememberDavidsen, Jörn
dc.contributor.committeememberPrusinkiewicz, Przemysław
dc.contributor.committeememberNorman, Ann-Lise
dc.contributor.committeememberLines, Larry
dc.contributor.committeememberHillen, Thomas
dc.date.accessioned2015-12-22T21:25:24Z
dc.date.available2015-12-22T21:25:24Z
dc.date.issued2015-12-22
dc.date.submitted2015
dc.description.abstractIn this work, a new model for macroscopic plant tissue growth based on dynamical Riemannian geometry is presented. We treat 1D and 2D tissues as continuous, deformable, growing geometries for sizes larger than 1mm. The dynamics of the growing tissue are described by a set of coupled tensor equations in non-Euclidean (curved) space. These coupled equations represent a novel feedback mechanism between growth and curvature dynamics. For 1D growth, numerical simulations are compared to two measures of root growth. First, modular growth along the simulated root shows an elongation zone common to many species of plant roots. Second, the relative elemental growth rate (REGR) calculated in silico exhibits temporal dynamics recently characterized in high-resolution root growth studies but which thus far lack a biological hypothesis to explain them. Namely, the REGR can evolve from a single peak localized near the root tip to a double-peak structure. In our model, this is a direct consequence of considering growth as both a geometric reaction-diffusion process and expansion due to a distributed source of new materials. In 2D, we study a circularly symmetric growing disk with emergent negative curvatures. These results are compared against thin disk experiments, which are a proxy model for plant leaves. These results also apply to the curvature evolution and the inhomogeneous growth pattern of the Acetabularia cap. Lastly, we extend the model to anisotropic disks and predict the growth dynamics for a 2D curved surface which develops an elongated shape with localized ruffling. Our model also provides several measures of the dynamics of tissue growth. These include the time evolution of the metric and velocity field, which are dynamical variables in the model, as well as expansion, shear and rotation which are deformation tensors characterizing the growth of the tissue. The latter are physically measurable quantities that remain to be fully explored using modern tissue growth imagining techniques.en_US
dc.identifier.citationPulwicki, J. (2015). Dynamics of Plant Growth; A Theory Based on Riemannian Geometry (Doctoral thesis, University of Calgary, Calgary, Canada). Retrieved from https://prism.ucalgary.ca. doi:10.11575/PRISM/25763
dc.identifier.doihttp://dx.doi.org/10.11575/PRISM/25763
dc.identifier.urihttp://hdl.handle.net/11023/2703
dc.language.isoeng
dc.publisher.facultyGraduate Studies
dc.publisher.institutionUniversity of Calgaryen
dc.publisher.placeCalgaryen
dc.rightsUniversity of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission.
dc.subjectPlant Physiology
dc.subjectBiophysics
dc.subjectPhysics
dc.subjectFluid and Plasma
dc.subjectPhysics--Theory
dc.subjectEngineering--Mechanical
dc.subject.classificationRiemannian geometryen_US
dc.subject.classificationRicci flowen_US
dc.subject.classificationPlant growthen_US
dc.subject.classificationMathematical modellingen_US
dc.subject.classificationPartial Differential Equationsen_US
dc.subject.classificationTensorsen_US
dc.subject.classificationDifferential Geometryen_US
dc.subject.classificationNumerical Simulationsen_US
dc.subject.classificationContinuum Mechanicsen_US
dc.subject.classificationDynamical systemsen_US
dc.subject.classificationMechanotransductionen_US
dc.subject.classificationMultiscale feedbacken_US
dc.subject.classificationSystems biologyen_US
dc.subject.classificationReaction-diffusionen_US
dc.subject.classificationCurvatureen_US
dc.titleDynamics of Plant Growth; A Theory Based on Riemannian Geometry
dc.typedoctoral thesis
thesis.degree.disciplinePhysics and Astronomy
thesis.degree.grantorUniversity of Calgary
thesis.degree.nameDoctor of Philosophy (PhD)
ucalgary.item.requestcopytrue

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